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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs6002719 chr22:42787282 T/C 9.44E-15 404 15.23 15.73 6.47 KM Plot
LGG rs6002728 chr22:42811156 A/G 4.67E-8 404 15.33 16.73 4.4 KM Plot
LGG rs6003942 chr22:24239065 A/G 2.96E-5 407 6.35 15.08 15.33 KM Plot
LGG rs60097840 chr10:72244385 C/T 4.84E-9 399 15.17 17.53 8.07 KM Plot
LGG rs60100837 chr6:36032088 C/T 1.0E-9 406 15.67 14.95 6.15 KM Plot
LGG rs60342497 chr6:36061461 A/G 9.31E-10 407 15.63 15.15 6.15 KM Plot
LGG rs60415846 chr16:67849905 G/GCT 2.16E-11 407 15.17 18.37 6.47 KM Plot
LGG rs60417080 chr13:80641209 T/A 6.79E-6 397 16.27 13.2 6.53 KM Plot
LGG rs6041769 chr20:13000307 C/A 7.16E-6 395 15.2 15.25 18.17 KM Plot
LGG rs60461663 chr15:31881857 C/G 0.00014 405 15.27 15.45 12.4 KM Plot
LGG rs60481532 chr6:35994942 C/T 9.5E-10 407 15.6 15.17 6.15 KM Plot
LGG rs6062327 chr20:62499309 T/A 4.58E-13 403 15.2 15.37 5.4 KM Plot
LGG rs6062373 chr20:61480444 G/C 3.23E-6 394 15.72 15.67 5.5 KM Plot
LGG rs6062557 chr20:62497644 G/A 5.45E-13 403 15.2 15.37 5.4 KM Plot
LGG rs6062559 chr20:62499663 T/C 5.45E-13 403 15.2 15.37 5.4 KM Plot